PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G160000.4.p
Common NameSETIT_025839mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 1148aa    MW: 127362 Da    PI: 9.4781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G160000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-084681340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W+++E e+++ a +++G++ W++Ia  +   Rt  ++
  Seita.8G160000.4.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81
                        6*****************99.********9.9998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.86E-104292IPR009057Homeodomain-like
SMARTSM007173.2E-44391IPR001005SANT/Myb domain
PfamPF002491.3E-64686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-54685IPR009057Homeodomain-like
PROSITE profilePS500906.0174786IPR017877Myb-like domain
CDDcd001671.42E-54789No hitNo description
SMARTSM011352.2E-56623724IPR033471DIRP domain
PfamPF065849.7E-33623723IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1148 aa     Download sequence    Send to blast
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDERGAP HRQAKPDSNN GDDEGAHVAA LALAEVYQRG  240
GSPQVSQTPG RSGDRMFLSP IKSSDRKNAD SEMGSSKLHG FQLDADYPEA SLGSREAETG  300
DYTKGASYLM TNKGSPSGKP QKKVKRSQKR RKKAVRKTGD QFEYDREACS GTEEGHSARK  360
AKEEPELEAL GRKTAWPSST SNKRSRQLFF DDDISALDAL HTLADLSVNI LQPSSVVESE  420
SSAQIKDENK DNDSDGKPSI PAAVSVYEQK DYSKSMAKKL KRQSEIASTD MVTRKKAKLA  480
KDPHHDGSTT SEVKQQACTC GVKTEKKKRK SSTGKVSKDE KNILKDVEKT EVSAEEGKVS  540
SNKETTARGA TPPQADLTSK VKSRRKGGIQ KSLTQECKPT EGADDSGSDK LSYSLSNIID  600
VKDKLSHCLS SRLLRRWCMF EWFYSAIDYP WFAKSEFVEY LNHVKLGHVP RLTRVEWGVI  660
RSSLGKPRRL SKQFLCEERE KLSQYRDSVR QHYAELRSGI REGLPTDLAR PLAVGQRVIA  720
CHPRTRELHD GNVLTVDDNR CRVQFDRPEL GVEFVMDIDC MPLHPPENFP ESLRQQNIVN  780
EYYSRLSEAN EDQMKELGNG GGARFTSNLN GADATFHIPP GHPISTLMKQ AKAKATVNEV  840
TVATQQAIYN QPSTLSQIQE READIRALAE LSRALDKKEA LLVELRHMNE EVSGKQRDGE  900
IIRDLEHFRK QYAMVLVQLR DSNDQVAGAL LSLRQRNTYH GNPVQSYPKS MENGIAFAGA  960
PDPYNLFGYI NPESGSQVIE VIETSKCRAK MMVDVAIQAM CKVSEGENPF AKIGEALDNF  1020
NSRGTGSGSS ILGIRRIPPD SGQSNASYQE NGTPAPATNN SSRLPNGGNS DGQFPNELIS  1080
SCVAMMLMIK NCTEKQYHPA EVAHILDSAL SGLQPCSSQN IPIFREIEMC MGIIKNQMLA  1140
LIPTASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320336QKKVKRSQKRRKKAVRK
2323329VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389050.0BT038905.1 Zea mays full-length cDNA clone ZM_BFb0339F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703938.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X1
TrEMBLK3ZGY70.0K3ZGY7_SETIT; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding